1 Chapter overview
In analytical chemistry you almost never measure the analyte in its original matrix. A drug tablet, a river-water sample, a food extract — each is a mixture, and the detector cannot tell your analyte apart from everything else. So before the measurement comes a separation: break the mixture into its components, then quantify them one by one. This chapter is about the separation techniques that dominate modern analytical work.
The centrepiece is chromatography: band broadening (why peaks spread), column efficiency (how many theoretical plates the column gives), and resolution (how well two peaks are separated) — with the numerical problems these generate. Then the two great instruments built on these principles: gas chromatography (GC) and high-performance liquid chromatography (HPLC). Finally, a chemistry turn: ionic liquids (synthesis, properties, applications) and the wider family of green solvents.
Chromatography is a separation method in which the components of a sample are carried by a mobile phase through a stationary phase. Each component partitions between the two phases to a different extent, so components travel at different speeds and elute (exit the column) at different times. A plot of detector signal against time is a chromatogram.
Roadmap: §2 builds the principles — retention, capacity factor, selectivity, the three band-broadening mechanisms, GC and HPLC hardware, ionic liquids and green solvents. §3 derives the working equations: van Deemter, plate number, HETP and the Purnell resolution equation. §4 turns them into exam numericals. Note: no question from this chapter appeared in the 2020–2024 papers — so §6 carries an honest empty state, and the whole chapter is built directly from the reference books.
2 Core concepts
2.1 · The chromatographic experiment
A small volume of sample is injected into a flowing mobile phase (a gas in GC, a liquid in HPLC), which sweeps it through a column containing the stationary phase (a coated liquid film or solid particles). Solute molecules repeatedly partition between the two phases. A solute that prefers the mobile phase races through; one that prefers the stationary phase lingers. Each solute therefore has a characteristic retention time : the time between injection and the peak maximum at the detector.
Hold-up (dead) time : time an unretained species (one that never enters the stationary phase) needs to cross the column. Adjusted retention time : the extra time the solute actually spends in the stationary phase. Capacity (retention) factor : the number of column volumes of mobile phase needed to elute the solute — equivalently the ratio of time the solute spends in the stationary vs mobile phase. Selectivity (separation) factor , with : how differently two solutes are retained.
Rule of thumb from Harris and Skoog: keep — below 1 the solute barely retains and separation is hard; above 10 you wait forever for little extra resolution. Selectivity must exceed 1 for any separation at all; values near 1.05–1.2 are the hard cases where efficiency (plates) has to do the heavy lifting.
2.2 · Band broadening: why peaks spread
An injected band starts as a sharp plug, but by the detector it has spread into a broad, roughly Gaussian peak. Two theories explain it. Plate theory (Martin–Synge) treats the column as stacked equilibrium stages — "theoretical plates" — and gives the counting tools (N, HETP). Rate theory (van Deemter) asks why the band spreads and gives the optimisation tool: the van Deemter equation. Three in-column mechanisms matter:
| Term | Name | Physical origin | Velocity dependence |
|---|---|---|---|
| Eddy diffusion | Packed particles force molecules along paths of different lengths — some short cuts, some detours. | Constant (independent of ). : smaller, uniform particles help. | |
| Longitudinal (axial) diffusion | Molecules diffuse along the column axis, from the concentrated band centre outward, while migrating. | Falls as rises — slow flow gives diffusion time to act. . | |
| Resistance to mass transfer | Partition between phases is not instantaneous; molecules in the two phases get out of step with each other. | Grows with — fast flow leaves no time for equilibrium. Thinner films and smaller particles help. |
In open-tubular (capillary) columns there is no packing, so the term vanishes — the governing form is the Golay equation, , with separate mass-transfer terms for stationary and mobile phases.
The column is not the only band-spreader. Broadening from the injector (finite injection volume), connecting tubing, and detector cell volume adds to the column's own. Variances add: . This is why instruments use low-volume injectors, short narrow tubing, and small detector cells — a 10 000-plate column is wasted if the detector smears the bands.
2.3 · Gas chromatography
In GC the mobile phase is an inert carrier gas — He (best, safest), N2 (cheaper, needs lower optimum flow), or H2 (fastest, flammable) — and the sample must be volatile and thermally stable (typically bp < ~350 °C, or made volatile by derivatisation). Solutes partition between the gas and a liquid stationary phase coated on the column walls.
| Column type | Dimensions | Notes |
|---|---|---|
| Packed | 2–6 m × 2–4 mm i.d., 60/80–100/120 mesh particles | High sample capacity; modest plates (~103–104); being replaced by capillaries. |
| Capillary / WCOT (wall-coated open tubular) | 10–100 m × 0.1–0.53 mm i.d., 0.1–5 µm film | Standard today: up to ~105 plates, no term; small capacity (~ng per component). |
Because retention in GC is driven by vapour pressure, the column sits in a temperature-controlled oven and wide-boiling mixtures are run with temperature programming: start cool to resolve the volatiles, then ramp (typically 5–20 °C/min) to elute the heavies in a reasonable time — sharp peaks throughout instead of the broad late peaks of an isothermal run.
| Detector | Selectivity | Destructive? | Typical detection limit |
|---|---|---|---|
| FID — flame ionisation | Almost universal for organics (C–H); blind to H2O, CO2 | Yes | ~10−12 g/s (mass-sensitive) |
| TCD — thermal conductivity | Universal (anything differing from carrier gas) | No | ~10−7 g/mL (concentration-sensitive) |
| ECD — electron capture | Selective: halogens, nitro groups, peroxides, organometallics | No | ~10−13 g/mL (the pesticide detector) |
| MS — mass spectrometry | Universal + structural ID via m/z and library spectra | Yes | ~10−12 g (pg range; instrument-dependent) |
2.4 · High-performance liquid chromatography
HPLC swaps the gas for a liquid mobile phase pumped at high pressure through a short column of fine particles. No volatility requirement — the workhorse for drugs, biomolecules, polymers, and anything thermally fragile. The hardware chain:
Pump — reciprocating (dual-piston) pump delivering pulse-free flow ~0.1–10 mL/min at up to ~400 bar (6000 psi). Injector — a loop (Rheodyne-type) valve that drops a fixed µL volume into the high-pressure stream without stopping flow. Column — stainless-steel, typically 3–25 cm × 4.6 mm, packed with 3–5 µm silica-based particles; efficiency follows the van Deemter terms, and smaller particles cut both and . Detectors — UV-Vis (254 nm fixed or diode-array; the default, ng sensitivity, needs a chromophore), refractive index (RI) (universal but insensitive, no gradient use), fluorescence (the most sensitive, ~pg, but only for fluorescing analytes).
| Mode | Stationary phase | Mobile phase | Elutes first |
|---|---|---|---|
| Normal phase | Polar (bare silica, amino) | Non-polar (hexane, chloroform) | Least polar analytes |
| Reversed phase | Non-polar (C18, C8 bonded silica) | Polar (water–methanol/acetonitrile) | Most polar analytes — the ~75% default |
Elution strategy: isocratic (constant mobile-phase composition — simple, fine when values are similar) vs gradient (composition ramps from weak to strong solvent during the run — the LC analogue of temperature programming; sharp peaks for both weakly and strongly retained analytes). The RI detector cannot be used with gradients (its baseline drifts with composition).
| GC | HPLC | |
|---|---|---|
| Mobile phase | Inert gas (He, N2, H2) | Liquid (water–organic mixtures) |
| Sample requirement | Volatile, thermally stable | Soluble; no volatility needed |
| Typical columns | 10–100 m capillaries | 3–25 cm packed columns |
| Plates | Up to ~105 (capillary) | ~103–2×104 |
| Selectivity lever | Stationary-phase chemistry + temperature | Mobile-phase composition (gradient) |
2.5 · Ionic liquids
An ionic liquid (IL) is a salt that is liquid below 100 °C (many are liquid at room temperature — RTILs), e.g. 1-butyl-3-methylimidazolium hexafluorophosphate, [bmim][PF6]. Bulky, asymmetric organic cations (imidazolium, pyridinium, ammonium, phosphonium) frustrate crystal packing, so the lattice energy stays low enough for the salt to melt near room temperature.
Synthesis is a two-step classic: (1) quaternisation (Menshutkin reaction) — an amine or phosphine attacks an alkyl halide, e.g. 1-methylimidazole + 1-chlorobutane → [bmim]Cl; (2) anion metathesis/exchange — the halide is swapped for the target anion, e.g. [bmim]Cl + HPF6 → [bmim][PF6] + HCl, or with NaPF6/NaBF4. The anion largely sets the properties: halides give water-miscible hydrophilic ILs; PF6−, NTf2− give hydrophobic ones.
Properties — the exam list: negligible vapour pressure (no VOC emissions, no evaporative loss); wide liquid range (often liquid from below 0 °C to decomposition above 200–300 °C); tunability ("designer solvents" — swap cation/anion to dial polarity, miscibility, acidity); good thermal stability; intrinsic ionic conductivity; non-flammability of most common ILs.
Applications: green solvents replacing volatile organics in synthesis and liquid–liquid extraction; separations (extractive distillation, e.g. aromatics/aliphatics; CO2 capture; metal-ion extraction); catalysis (immobilising homogeneous catalysts in a separate IL phase for easy product decantation — biphasic catalysis); electrolytes for batteries and electrodeposition (wide electrochemical window).
2.6 · Green solvents
Green chemistry's solvent problem: solvents are the bulk of chemical waste. The replacement family, in the order the syllabus (and Tundo's Green Chemistry framing) presents them:
Water — the greenest solvent: non-toxic, non-flammable, cheap; enables aqueous biphasic catalysis (e.g. the Ruhrchemie/Rhône-Poulenc hydroformylation). Limitation: most organics are insoluble; workarounds include surfactants and "on-water" rate accelerations. Supercritical CO2 (scCO2, Tc = 31 °C, Pc = 74 bar) — gas-like diffusivity with liquid-like density, tunable by pressure, leaves zero residue on depressurisation; used for extraction (decaffeination), chromatography (SFC), and polymer processing. Ionic liquids — above. Deep eutectic solvents (DES) — mixtures like choline chloride + urea (1:2) that melt far below either component (Abbott et al., 2003): cheap, biodegradable, easy to prepare — the "poor man's ionic liquid".
Industry codifies greenness in solvent selection guides (GSK, Pfizer, Sanofi): each common solvent is scored red/amber/green on waste, environmental impact, health, flammability/reactivity and life-cycle. Exam point: the guides exist to drive substitution — e.g. replace dichloromethane and DMF (red) with 2-MeTHF, ethyl acetate or water (green) where the chemistry allows.
3 Key derivations
3.1 · The van Deemter equation
Rate theory adds the three broadening variances per unit column length. Each is a plate-height contribution — a length (mm) — so they simply add:
Eddy diffusion . Molecules taking different paths through the packing arrive at different times. , with the particle diameter and a packing-uniformity constant — velocity-independent, so it is a floor under the curve.
Longitudinal diffusion . In time a band diffuses ; residence time is , so the plate-height contribution is with . Dominant at low flow — the left arm of the curve.
Mass-transfer resistance . Partition lags equilibrium; the lag grows with flow, so the contribution is linear in . Dominant at high flow — the right arm of the curve.
Assemble. Adding the three contributions gives the van Deemter equation — and because falls while rises, the sum has a minimum at an optimum velocity.
Differentiate and set to zero: . Solving gives the optimum velocity, and substituting back gives the minimum plate height:
Below you lose plates to diffusion (B term); above it you lose plates to mass-transfer lag (C term). Practical GC runs at roughly 2× — the "optimum practical gas velocity": plate height rises only slightly, but analysis time drops a lot. Capillary columns kill ; smaller particles and thinner films shrink and .
3.2 · Column efficiency: plates and HETP
Peak shape. A chromatographic peak is approximately Gaussian. For a Gaussian, the base width (between the tangents at the inflection points) spans and the half-height width spans .
Plate count. Plate theory gives . Eliminate with — or for the half-height form.
Plate height. Height equivalent to a theoretical plate: — the column length consumed per plate. Smaller (or larger ) = narrower peaks = more efficient column.
and must be in the same units (both minutes, or both seconds) — the ratio is dimensionless. is the base width (4σ); the half-height width needs the 5.54 coefficient. Mixing them up is the classic numerical error.
3.3 · Resolution and the Purnell equation
Resolution measures how well two adjacent peaks are separated: peak spacing over average peak width. Baseline separation (≤0.3% overlap) needs ; leaves ~2% overlap.
Now the master result. Write via (4) for the later peak, express through and (since and ), and (6) rearranges into the Purnell (master resolution) equation — resolution factorised into its three independent levers:
| Lever | Factor in (7) | How to move it | Cost |
|---|---|---|---|
| Efficiency | Longer column, smaller particles, | Weak: doubling needs 4× the plates (∝ √N) | |
| Selectivity | Change stationary phase, temperature, mobile-phase composition | Strongest lever — the chemist's lever | |
| Retention | Weaker/stronger solvent, temperature | Saturates: beyond gains vanish while time explodes |
When peaks overlap, do not first buy a longer column — change the selectivity . Because , efficiency is the most expensive way to fix a separation and selectivity is the cheapest. Retention is tuned only into the useful 1–10 window.
4 Worked examples
Six exam-style numericals. Every number below is worked through step by step — check each division yourself; these are exactly the calculations the paper asks for.
Example 1 · Plate number from retention time and peak width
Given: a solute elutes at min with base width min. Also measured: half-height width min.
Base-width formula (4): . Ratio . Square: . Times 16: ≈ 4300 plates.
Half-height check: ≈ 4200 plates — consistent, as it must be for the same peak.
Example 2 · HETP from plates
Given: the column in Ex. 1 is cm long and gives plates.
≈ 58 µm. For a packed HPLC-style column this is an ordinary, realistic plate height; a capillary GC column at its optimum can reach ~0.3–0.5 mm.
Example 3 · Resolution from a chromatogram
Given: two adjacent peaks: min, min; base widths min, min.
Spacing min. Resolution (6): .
Verdict: — the peaks overlap slightly (~1% area); not baseline-separated. Fix it by improving selectivity , not by reflexively lengthening the column.
Example 4 · How much more efficiency to reach a target resolution?
Given: current at ; target with and unchanged.
From the Purnell equation, , so . Plates must rise 54%, to .
At constant , : the 25.0 cm column must become cm — and analysis time rises ~54% too. This is the price of the √N law.
Example 5 · Optimum velocity from van Deemter parameters
Given: cm, with in cm/s.
Read off cm, cm2/s, s. Optimum (2): cm/s.
Minimum plate height (3): cm. Check: cm ✓.
For a 25 cm column at the optimum: ≈ 580 plates.
Example 6 · The Purnell equation as a design tool
Given: hold-up time min; min, min; later peak has plates.
Capacity factors: , . Selectivity: .
Purnell (7): . Baseline separation with margin.
What if the phase were changed to raise to 1.20? — selectivity moves the needle far more than adding plates ever could.
Always use the later peak's and in (7); and in the same units; base width with 16, half-height width with 5.54. And quote to two decimal places — 1.41 vs 1.50 is a pass/fail distinction.
5 Figures
6 PYQ bank
No question from this chapter — band broadening, column efficiency, resolution, GC, HPLC, ionic liquids, or green solvents — appeared in any of the five years' papers (2020–2024). This chapter is therefore built entirely from the reference books (Skoog/Holler/Crouch, Harris, Tundo et al.). Treat it as high-probability unasked syllabus: examiners frequently rotate to long-ignored units.
The five questions below are practice questions written from the books — they are NOT PYQs and never appeared in any paper. Use them to test yourself.
P1. [Practice — not a PYQ] State the van Deemter equation. Identify the three terms, say which dominates at low and at high mobile-phase velocity, and explain why capillary (open-tubular) columns have no A term.
. A — eddy diffusion (multiple flow paths through packing); B/u — longitudinal diffusion; Cu — resistance to mass transfer. At low u the B/u term dominates (diffusion has time to act); at high u the Cu term dominates (no time for phase equilibrium). Capillaries have no packing, so there are no multiple paths — A = 0 (Golay equation).
P2. [Practice — not a PYQ] A peak elutes at min with half-height width min on a 30 cm column. Calculate N and HETP.
plates. mm ≈ 76 µm.
P3. [Practice — not a PYQ] Two peaks: and min, base widths and min. Calculate and state whether separation is baseline.
. — baseline separation achieved.
P4. [Practice — not a PYQ] Chlorinated pesticide residues in river water must be determined at trace level by GC. Which detector do you choose, and why? Contrast with FID and TCD.
ECD (electron capture detector): selective for electrophores (halogens, nitro groups), detection limit ~10−13 g/mL — the most sensitive choice for chlorinated analytes. FID is near-universal for organics but not selective and less sensitive here; TCD is universal and non-destructive but far too insensitive (~10−7 g/mL).
P5. [Practice — not a PYQ] Give the two-step synthesis of [bmim][PF6] starting from 1-methylimidazole, and state two properties that qualify ionic liquids as green solvents.
(1) Quaternisation: 1-methylimidazole + 1-chlorobutane → [bmim]Cl (Menshutkin reaction). (2) Anion metathesis: [bmim]Cl + HPF6 → [bmim][PF6] + HCl. Green credentials: negligible vapour pressure (no VOC emissions) and wide liquid range / tunability / non-flammability.
7 Exam Q&A
Q1. Define the capacity factor . What range is recommended?
— the ratio of time the solute spends in the stationary phase to that in the mobile phase. Keep .
Q2. What is the selectivity factor , and what value must it exceed for separation?
, with . It must exceed 1 — at the peaks coincide.
Q3. Name the three terms of the van Deemter equation.
A — eddy diffusion; B/u — longitudinal (axial) diffusion; Cu — resistance to mass transfer.
Q4. Which band-broadening term dominates at very low flow? At very high flow?
Low flow: B/u (longitudinal diffusion). High flow: Cu (mass-transfer resistance).
Q5. Give the optimum velocity and minimum plate height.
; .
Q6. Define the plate number and HETP.
; HETP .
Q7. What resolution value corresponds to baseline separation?
(≈99.7% separated). still leaves ~2% overlap.
Q8. State the Purnell equation and name its three levers.
. Levers: efficiency , selectivity , retention .
Q9. Name the GC carrier gases and give one advantage of capillary over packed columns.
He, N2, H2. Capillary (WCOT) columns give up to ~105 plates and have no eddy-diffusion (A) term.
Q10. Name two green solvents and state the purpose of solvent selection guides.
Any two: water, supercritical CO2, ionic liquids, deep eutectic solvents. Guides (GSK, Pfizer) score solvents red/amber/green to drive substitution of hazardous solvents.
8 Quick revision
Boxed results — the whole chapter on one screen
- Retention: ; capacity factor ; selectivity
- (1) van Deemter:
- (2) Optimum velocity: ; (3)
- (4) Plates: ; (5) HETP:
- (6) Resolution: ; baseline needs
- (7) Purnell: — , so doubling needs 4× plates
- Extra-column broadening:
- Ionic liquid synthesis: quaternisation (amine + alkyl halide) → anion metathesis; properties: negligible vapour pressure, wide liquid range, tunability, conductivity
Symbols
| Symbol | Meaning | Symbol | Meaning |
|---|---|---|---|
| retention time | hold-up (dead) time | ||
| capacity (retention) factor | selectivity factor | ||
| theoretical plates | plate height (HETP) | ||
| mobile-phase linear velocity | van Deemter coefficients | ||
| resolution | base / half-height peak width | ||
| retention-time difference | column length |